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Contents: Volume 2009   [Index by Author] 

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Editorial Back

David Landsman, Robert Gentleman, Janet Kelso, and B. F. Francis Ouellette
DATABASE: A new forum for biological databases and curation
Database (2009) Vol. 2009, bap002; doi:10.1093/database/bap002 published on March 26, 2009 [Extract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Original article Back

K.G. Dowell, M.S. McAndrews-Hill, D.P. Hill, H.J. Drabkin, and J.A. Blake
Integrating text mining into the MGI biocuration workflow
Database (2009) Vol. 2009, bap019; doi:10.1093/database/bap019 published on November 20, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Neil D. Rawlings
A large and accurate collection of peptidase cleavages in the MEROPS database
Database (2009) Vol. 2009, bap015; doi:10.1093/database/bap015 published on November 2, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, and Vassilis Aidinis
Models for financial sustainability of biological databases and resources
Database (2009) Vol. 2009, bap017; doi:10.1093/database/bap017 published on October 23, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

P. Gaudet, L. Lane, P. Fey, A. Bridge, S. Poux, A. Auchincloss, K. Axelsen, S. Braconi Quintaje, E. Boutet, P. Brown, E. Coudert, R.S. Datta, W.C. de Lima, T. de Oliveira Lima, S. Duvaud, N. Farriol-Mathis, S. Ferro Rojas, M. Feuermann, A. Gateau, U. Hinz, C. Hulo, J. James, S. Jimenez, F. Jungo, G. Keller, P. Lemercier, D. Lieberherr, M. Moinat, A. Nikolskaya, I. Pedruzzi, C. Rivoire, B. Roechert, M. Schneider, E. Stanley, M. Tognolli, K. Sjölander, L. Bougueleret, R.L. Chisholm, and A. Bairoch
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase
Database (2009) Vol. 2009, bap016; doi:10.1093/database/bap016 published on October 15, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Lope A. Flórez, Sebastian F. Roppel, Arne G. Schmeisky, Christoph R. Lammers, and Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
Database (2009) Vol. 2009, bap012; doi:10.1093/database/bap012 published on September 17, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Nils Gehlenborg, Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, David Baxter, Brianne Petritis, Rose Pitstick, Bruz Marzolf, Stephen J. DeArmond, George A. Carlson, and Leroy Hood
The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases
Database (2009) Vol. 2009, bap011; doi:10.1093/database/bap011 published on September 17, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Gregory Vey
Differential direct coding: a compression algorithm for nucleotide sequence data
Database (2009) Vol. 2009, bap013; doi:10.1093/database/bap013 published on September 17, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

A. Laganà, S. Forte, A. Giudice, M. R. Arena, P. L. Puglisi, R. Giugno, A. Pulvirenti, D. Shasha, and A. Ferro
miRò: a miRNA knowledge base
Database (2009) Vol. 2009, bap008; doi:10.1093/database/bap008 published on August 7, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

L. Wissler, E. Dattolo, A. D. Moore, T. B. H. Reusch, J. L. Olsen, M. Migliaccio, E. Bornberg-Bauer, and G. Procaccini
Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs
Database (2009) Vol. 2009, bap009; doi:10.1093/database/bap009 published on August 4, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D’Antonio, Paolo D’onorio De Meo, and Tiziana Castrignanò
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells
Database (2009) Vol. 2009, bap007; doi:10.1093/database/bap007 published on July 28, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Hui Yu, Fu-Dong Yu, Guo-Qing Zhang, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, and Yi-Xue Li
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels
Database (2009) Vol. 2009, bap006; doi:10.1093/database/bap006 published on June 2, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Junjian Ni, Anuradha Pujar, Ken Youens-Clark, Immanuel Yap, Pankaj Jaiswal, Isaak Tecle, Chih-Wei Tung, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, and Susan McCouch
Gramene QTL database: development, content and applications
Database (2009) Vol. 2009, bap005; doi:10.1093/database/bap005 published on May 12, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

R. Travis Moreland, Joseph F. Ryan, Christopher Pan, and Andreas D. Baxevanis
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family
Database (2009) Vol. 2009, bap004; doi:10.1093/database/bap004 published on April 28, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

ShuoYong Shi, Jimin Pei, Ruslan I. Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, and Nick V. Grishin
Analysis of CASP8 targets, predictions and assessment methods
Database (2009) Vol. 2009, bap003; doi:10.1093/database/bap003 published on April 28, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Maria C. Costanzo, Marek S. Skrzypek, Robert Nash, Edith Wong, Gail Binkley, Stacia R. Engel, Benjamin Hitz, Eurie L. Hong, J. Michael Cherry, and the Saccharomyces Genome Database Project
New mutant phenotype data curation system in the Saccharomyces Genome Database
Database (2009) Vol. 2009, bap001; doi:10.1093/database/bap001 published on March 26, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Tutorial Back

Rachael P. Huntley, David Binns, Emily Dimmer, Daniel Barrell, Claire O’Donovan, and Rolf Apweiler
QuickGO: a user tutorial for the web-based Gene Ontology browser
Database (2009) Vol. 2009, bap010; doi:10.1093/database/bap010 published on September 29, 2009 [Abstract] [FREE Full Text] [PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Database tool Back

Willy Valdivia-Granda and Francis Larson
ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies
Database (2009) Vol. 2009, bap014; doi:10.1093/database/bap014 published on October 12, 2009 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.